ABSTRACT
Background
Pharmacognosy is a scientific and systematic study of natural products helps in identification of raw material through morphological and chemical properties. Citrus limon (L.) Burm. f. is a tree, and its fruits are used for nutritional and therapeutic values in Indian traditional system of medicine, Ayurveda, and other like African and Romanian traditional systems. Citrus limon has a wide use but its pharmacognostical, physicochemical, phytochemical profile is not published till date. Thus, to develop a preliminary pharmacognostical, physicochemical, and phytochemical profile of Citrus limon current research has been carried out.
Materials and Methods
Citrus limon fruits were collected from its natural habitat and authenticated at CSIR-National Institute of Science Communication and Policy Research (CSIR-NIScPR). Pharmacognostical, physicochemical analysis was done as per Ayurvedic Pharmacopeia of India.
Results
The macroscopic analysis suggested that fruit of Citrus limon was ovoid; the microscopic analysis revealed the presence of prismatic calcium oxalate crystals; in the physicochemical parameters loss on drying was found 11.90% and pH 2.98. The phytochemical analysis revealed presence of proteins, alkaloids and flavonoids. The fourier transform infrared spectroscopy showed presence of alcohol, alkenes, and aromatic compounds. Fingerprinting analysis of C. limon through high performance thin layer chromatography showed presence of various phytoconstituents in different concentrations through different peaks and R f values and also sample showed presence of 2.36% limonene.
Conclusion
The present study will serve as a quality control parameter of Citrus limon fruit. The study will be helpful in easy identification, authentication, and detection of adulteration in marketed samples.
INTRODUCTION
Plant-based medicines are widely used by most of the population for health (Nasim,et al., 2022). In Ayurveda, various plant species are described for therapeutic effect reliant on the genuineness of raw material. The raw material of plants are derived from various geographical sources; hence, the correct identification of raw material is essential (Shresthaet al., 2018). Pharmacognosy is a scientific and systematic study of natural products may be of animal, mineral, metal or of plant origin (Khanet al., 2020). It includes the study of morphological and chemical properties (Orhan I E, 2014) which helps in identification.
Citrus limon (L.) Burm. f. is a tree with yellow edible fruits of rutaceae family. It is used in Ayurveda to manage various diseases like Kasa (cough), Vibandha (constipation) etc. (Chunekar, 2015). The fruit juice has nutritional value along with vitamin C. Apart from Ayurveda traditional medicine, the juice is used in other traditional systems like in African traditional system, it is used to treat hypertension, cough, cold and irregular menstrual cycles. In Romanian traditional system, it is used to treat scurvy, sore throats, fever, and chest pain (Klimek-Szczykutowicz, M et al., 2020). The published literature revealed that peel and flesh of Citrus limon (C. limon) of Tunisia was evaluated for its phytochemical and physicochemical analysis (Makniet al., 2018). C. limon has been also evaluated for its cytotoxic, anxiolytic, and anti-spasmodic etc. activities in various studies (Dosoky & Setzer, 2018). However, C. limon fruit of Indian origin is not evaluated for its pharmacognostical, physicochemical, phytochemical, and analytical properties yet thus, the present study has been undertaken as it has therapeutic as well as nutritional values.
MATERIALS AND METHODS
Collection and authentication
Collection of mature fruits of C. limon was done from local market of Amritsar, Punjab. The sample was identified, authenticated, and the voucher specimen was placed in Raw Materials Herbarium and Museum (RHMD), CSIR-NIScPR, New Delhi.
Drying and grinding of C. limon fruits
The fresh mature C. limon fruits were taken, washed with tap water, and converted into small pieces with the help of knife, then dried in shade. After proper drying, the pieces of C. limon grinded to make fine powder with the help of mixer grinder.
Pharmacognostic evaluation
The morphological characteristics of C. limon fruit parts, including color, shape, size, taste, and texture, were assessed. The freshly collected fruits underwent for macroscopic observation. Anatomical study of samples was done with the help of stained hand/microtome sections which were observed under trinocular microscope after mounting. Staining was done with diluted aqueous safranin and fast green and after thoroughly washing sections was mounted in 40% glycerin. For examining powder characteristics, 5g of fine fruit powder was taken in chloral hydrate solution on a slide, warmed on a hot-plate for a short time, and then it was covered with a cover slip and observed under trinocular microscope. The microscopic images were thoroughly examined and the anatomical characteristics were noted.
Physicochemical evaluation
The dried fruit powder of C. limon was used for quantitative determination of physicochemical values including total ash, acid insoluble ash, moisture content (loss on drying), alcohol and water-soluble extractive as per Ayurvedic Pharmacopoeia of India (API) methods (Ministry of Health and Family Welfare [MoHFW], 2011).
Phytochemical investigation
Analytical grade chemicals were used in the experiment. HPLC-grade methanol, hydrochloric acid and ferric chloride were purchased from qualigen chemicals (Mumbai, India). Dragendorff’s reagent & Millon’s reagent were purchased from CDH (GIDC, Gujarat), sodium hydroxide was purchased from Merck (Mumbai, India).
5 g fine dried fruit powder was mixed in 30 mL methanol and 30 mL distilled water separately, and they were soaked for 6 hr on a rotatory shaker. After proper shaking of samples, they were kept for 18 hr to complete 24 hr, maceration procedure. After that, they were filtered through 1 no. Whatman filter paper to prepare methanolic and aqueous extracts respectively.
The preliminary phytochemical investigation of methanolic and aqueous extracts was performed according to standard protocol for the determination of proteins, alkaloids, flavonoids, tannins, and saponins (Kokateet al., 2015).
Analytical study
Fourier Transform Infrared Spectroscopy (FTIR)
FTIR analysis was done through PerkinElmer spectrum by using Universal Attenuated Total Reflectance (UATR) technique and spectra were taken in 4000-400 cm-1 range. The interpretation of peaks was done by IR spectrum table.
High Performance Thin Layer Chromatography (HPTLC)
Preparation of test solution
1 g sample was mixed in 10 mL n-hexane and kept for 24 hr maceration. Next day after 20 min. sonication it was filtered through Whatman filter paper no.1. This solution or extract was used for chromatographic analysis. The stationary phase was used HPTLC aluminium precoated Silica gel 60 F254 (Merck KGaA) plate of 10×10 cm with 0.2 mm thickness. A mobile phase of n-hexane: ethyl acetate (8:2 v/v) was emloyed. Camag Linomat 5 auto sampler is used for sampling.
The sample solution of 8 μL and 10 μL volumes was applied to the HPTLC plate using an 8 mm band width, maintaining a distance of 11.40 cm between the bands.
Derivatization: Anisaldehyde-sulphuric acid sprayed, and plate was heated at 100°C for 3 min.
Visualization: Visualization is performed at 254 nm, 366 nm and 540 nm wavelengths.
HPTLC with standard limonene
The volatile oil of C. limon peel was extracted with the help of Clevenger’s apparatus. n-hexane: ethyl acetate (8:2 v/v) was used as mobile phase. Limonene used as standard was procured from Sigma-Aldrich.
Sample preparation: 500 μL volatile oil dissolved in 1 mL n-hexane (v/v).
Standard preparation: 500 μL of standard limonene dissolved in 1 mL n-hexane (v/v).
RESULTS
Authentication
The C. limon fruit authentication no. is NIScPR/RHMD/ Consult/2022/4292-92-1 (Annexure 1).
Pharmacognostic evaluation
Macroscopic evaluation
C. limon fruits (3-5) were investigated from bottom to tip for its size, shape, color, etc., and the macroscopic features are noted below in Figure 1 and Table 1.
Parameters | Observations |
---|---|
Length | 7-13 cm |
Width | 5-9 cm |
Shape | Ovoid |
Nipple | Present |
Surface | Irregular wart rind |
Colour | Greenish yellow |
Fragrance | Citrus |
Pulp | Pale yellow |
No. of seeds | 30-40 in approx. 11 locules |
Taste | Sour |
Microscopic evaluation
Transverse Section of C. limon
Transverse Section (TS) of fruit part of C. limon showing circular to oval shaped outline. Bright yellowish smooth outer epicarp followed by hypodermis, outer mesocarp region embedded with large volatile oil glands, the inner portion being occupied by 10-11 or more segments of endocarp and reaching up to the central axis. TS of the pericarp shows a layer of epicarp, consisting of polygonal-shaped cells covered with single layer of cuticle, followed by hypodermis, spongy parenchymatous celled zone of mesocarp embedded with oval shaped lysigenous oil glands. Thick-walled lignified cells are located near the oil cavity walls. Prismatic crystals of calcium oxalate are present in the mesocarp region. Transverse Section of seed part of C. limon showing oval in outline shows cotyledon embedded with a row of vascular bundles and filled with aleurone grains. Testa shows radially elongated sclerenchymatous cells of epidermis with mucilaginous outer walls followed by a thin collapsed cells of perisperm, and endosperm is a narrow band of 3 to 4 rows of cells, embedded with aleurone grains; its innermost cells being collapsed. The cotyledon shows upper epidermis layer enclosing the cotyledonary cells embedded with small aleurone grains (Figure 2).
Powder microscopy of C. limon
Brownish yellow colored powder shows cells from mesocarp, fragment of seed coat, spiral vessels, prismatic calcium oxalate crystals up to 20μ, fibre up to 175 μ in length with a narrow lumen, thick-walled lignified cells, tannin cell, aleurone grain from cotyledons, oil globule from pericarp, and elongated sclereids from seed coat (Figure 3).

Figure 1:
(A-B): Macroscopic evaluation of C. limon; A: fresh sample; B: dry sample.
Physicochemical evaluation
The physicochemical profile of C. limon fruit powder has been performed, and the results are summarized in Table 2.
Parameters | Results |
---|---|
pH value (10% w/v) | 2.98 |
Loss on drying at 105 0C (w/w)% | 11.90 |
Total ash (w/w)% | 3.76 |
Acid insoluble ash (w/w)% | 0.15 |
Alcohol soluble extractive (w/v)% | 33.72 |
Water soluble extractive (w/v)% | 18.08 |
Phytochemical Investigation
Qualitative phytochemical screening of two types of extracts (methanolic and aqueous) of C. limon fruit have been performed, and the results are presented in Table 3.
Phytochemical group | Methanolic Extract | Aqueous Extract |
---|---|---|
Proteins | ++ | – |
Tannins | ++ | – |
Flavonoids | ++ | + |
Alkaloids | + | – |
Saponins | – | – |
Fourier Transform Infrared Spectroscopy (FTIR)
C. limon fruit powder was investigated in IR spectrum ranging 4000-400 cm-1, and the results after interpretation summarized in Table 4.
Peak wavelength | Appearance | Group | Compound class |
---|---|---|---|
3341.49 | Broad | O-H stretch | Alcohol |
3008.70 | Medium, Weak | =C-H stretch, C-H stretch | Alkenes, Aromatic Compounds |
2923.07 | Sharp | C-H stretch | Alkanes |
2853.29 | Sharp | C-H stretch, C-H stretch | Alkanes, Aldehydes |
1738.19 | Sharp | C=O stretch, C=O stretch, C=O stretch | Aldehydes, Ketones, Esters |
1629.26 | Broad | C=C stretch | Alkenes |
1365.49 | Sharp | NO2 stretch | Nitro Compounds |
1217.14 | Weak | C-F stretch | Alkyl & Aryl Halides |
High Performance Thin Layer Chromatography (HPTLC)
The HPTLC analysis of C. limon revealed the presence of various unknown phytochemicals through chromatograms obtained by scanning of sample at 254, 366 and 540 nm (Figure 4). The peak tables with Rf values are depicted in the Table 5.
Track No. | Rf at 254 nm | Rf at 366 nm | Rf at 540 nm |
---|---|---|---|
1 | 0.03, 0.08, 0.18, 0.51 | 0.02, 0.08, 0.18, 0.28, 0.51, 0.56, 0.62 | 0.20, 0.27, 0.40, 0.53, 0.66, 0.78 |
2 | 0.03, 0.08, 0.18, 0.50, 0.77 | 0.03, 0.08, 0.19, 0.28, 0.56 | 0.19, 0.27, 0.40, 0.52, 0.65, 0.78 |
Limonene was used as marker compound and Rf was observed at 0.61. The Rf values of all seven tracks of samples and limonene are mentioned in Table 6. The results showed presence of 2.36% of limonene in C. limon. The chromatographic scanning images and detailed calibration plot is mentioned in Figures 5 and 6.
Track No. | Sample | Rf | Area |
---|---|---|---|
1 | C. limon | 0.61 | 0.001 |
2 | 0.60 | 0.003 | |
3 | 0.60 | 0.009 | |
4 | Limonene | 0.61 | 0.0007 |
5 | 0.59 | 0.001 | |
6 | 0.60 | 0.003 | |
7 | 0.60 | 0.006 |
DISCUSSION
The present research study has been undertaken to establish preliminary quality control parameters including pharmacognosy, physicochemical, phytochemical, and analytical parameters of C. limon because these parameters are integral part of standardization and indicators of the safety and efficacy of herbal drugs (Alam F & Us Saqib QN, 2015a). In the present study the macroscopic study reveals presence of nipple and irregular wart rind in fresh sample of C. limon which are key identifying features.

Figure 2:
(A-H): Transverse Section of C. limon; A: T.S of pericarp, 10x view B: Oil globules, 40x view, C: Cells from mesocarp, 10x view, D: Reticulate vessels and prismatic crystals, 40x view, E: T.S of cotyledon, 10x view, F: T.S of seed coat, 10x view, G: T.S of cotyledon-enlarged view, 40x view, H: Oil filled thin walled parenchyma from cotyledon, 10x view. e: epidermis; hyp: hypodermis; oc: oil cavity; mes: mesocarp; enc: endocarp; og: oil globule; cmes: cells of mesocarp; rv: reticulate vessels; pr: prismatic crystal; epi: epicarp; cotc: cotyledonary cells; sdc: seed coat; omu: outer mucilaginous wall; esd: epidermal cells of seed; pers: perisperm.
The anatomical features such as vascular bundles, fibers, and cortex of a plant provide the key identifying features and have a crucial role in quality control and standardization (Majid et al., 2021a). The TS of C. limon showed presence of oval-shaped lysigenous oil glands and prismatic crystals of calcium oxalate in the mesocarp region. TS of seed showed presence of aleurone grain.
The powder microscopy also provides structural components of a powdered raw plant material (Majid N et al., 2021b). In the present study spiral vessels, prismatic calcium oxalate crystals, fibre with narrow lumen, thick-walled lignified cells, tannin cell, aleurone grain were seen in powder microscopic study indicating the presence of all fruit parts and seeds in the powder. The macroscopic and microscopic studies are important tool for detection of adulteration (Rageshet al., 2016). Phytochemical classes of phytoconstituents or secondary metabolites are the ones responsible for the pharmacological activity (Alam & Us Saqib, 2015b). In the present study preliminary phytochemical screening was done to find out groups of phytochemicals in methanolic and aqueous extracts. The present study showed the presence of protein, flavonoids, alkaloids and tannins in methanolic extract. The aqueous extract showed only the presence of flavonoids.
It is well reported that plant proteins have the potential to reduce the risk of developing metabolic syndrome, cancer, and useful in diabetes and weight control (Ahnenet al., 2019). Natural polyphenol substance groups are flavonoids having anti-oxidant and other pharmacological activities like antimicrobial and anti-inflammatory (Shenet al., 2022). Alkaloids are useful in human physiology and are used to improve body mass and composition (Sellamiet al., 2018). Tannins are class of polyphenols useful for anti-inflammatory, antimicrobial, antioxidant, and anticancer properties (Maugeriet al., 2022).

Figure 3:
(A-H): Powder microscopy of C. limon; A: fibre, 40x view, B: fibre, 40x view, C: Prismatic calcium oxalate crystals, 40x view, D: Tannin cell, 40x view, E: Thick walled lignified cells, safranin stained 40x view, F: Elongated sclereids from seed coat, Safranin stained, 10x view, G: Cells from seed coat, Safranin stained, 40x view, H: Oil globules and spiral vessels, 40x view.
Physicochemical parameter play important role in standardization and remain constant for a plant thus, they are helpful in detection of adulteration (Alam & Us Saqib, 2015c). The moisture content in physicochemical analysis is determined by Loss on drying (LOD), the ash value indicates the carbonate, oxalate, and silicate impurities, contamination with earthy material indicated by acid insoluble ash and the pH values suggests the acidic or basic nature of raw material (Khanet al., 2020). The physicochemical analysis of C. limon is mentioned in Quality Standards of Indian Medicinal Plants published by Indian Council of Medical Research (ICMR) and the current research results are comparable with it (Tandon N, 2016).
The FTIR analysis is indicative of possible functional groups with structural information (Songet al., 2020). The FTIR of C. limon suggested the presence of alcohol, alkenes, aromatic compounds, aldehydes, ketones, esters etc. functional groups (Figure 7).

Figure 4:
HPTLC chromatograms of C. limon visualized under A UV 254 nm, B UV 366 nm, C HPTLC visualizer 540 nm.

Figure 5:
Callibration curve of standard limonene and C. limon.

Figure 6:
HPTLC chromatograms of C. limon visualized under A UV 366 nm, B HPTLC visualizer 540 nm.

Figure 7:
Peaks in FTIR analysis of C. limon powder with respect to wavenumber and % transmittance.
The preliminary chromatographic fingerprinting is also done by HPTLC which is the advanced version of TLC, rapid, most acceptable, andauthoritativeanalyticaltoolusedforphytochemical and biochemical analysis (Bhargava A et al., 2021). In the present study the n-hexane extract of C. limon showed presence of various phytoconstituents in different concentrations (Figure 4, Table 5). The chromatogram of 10 μL scanned at 254 nm showed 5 peaks on track 2, while the chromatogram of 10 μL scanned at 366 nm showed 5 peaks on track 2 (Table 5). After derivatization the chromatogram of 10 μL was scanned at 540 nm and 6 peaks were present on track 2 (Table 5). The Rf values showed in Table 5 can be used for further evaluation and identification of unknown compounds. However, limonene is quantified in the study which was found 2.36% in peel oil. Limonene is reported having various pharmacological activities including neuroprotective (Eddin LB et al., 2021), anti-inflammatory (Kathem SH et al., 2024), anti-microbial (Han Y et al., 2019), cardio protective (Al Saffar RM et al., 2022) etc.
CONCLUSION
The fruits of C. limon are used as a food for nutritional value and for medicinal purpose as well. Thus, the quality control parameters of the C. limon fruits are very essential. The present study will serve as a quality control parameter of C. limon fruit. The study will be helpful in easy identification, authentication and detection of adulteration in marketed samples.
Cite this article:
Aggarwal P, Kumar V, Haridas R, Singh D, Chaudhari S, Ruknuddin G. Comprehensive Study on the Pharmacognostical, Physico-Phytochemical, and Analytical Properties of Citrus limon (L.) Burm. F. Fruit. J Young Pharm. 2025;17(2):344-52.